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Publications

Please help us renew our funding by citing the following publications:

How to cite ProHits (full system):

Liu, G., Zhang, J.P., Larsen, B, Stark, C., Breitkreutz, A., Lin, Z.-Y., Breitkreutz, B.-J., Ding, Y., Colwill, K., Pasculescu, A., Pawson, T, Wrana, J., Nesvizhskii, A.I., Raught, B, Tyers, M.**, and Gingras, A.-C.** (2010) ProHits: an integrated software platform for mass spectrometry-based interaction proteomics. Nat Biotech, 28:1015-7. (** co-corresponding authors).

OR

Liu G, Zhang J, Choi H, Lambert JP, Srikumar T, Larsen B, Nesvizhskii AI, Raught B, Tyers M, Gingras AC.(2012) Using ProHits to Store, Annotate, and Analyze Affinity Purification-Mass Spectrometry (AP-MS) Data. Curr. Protoc. Bioinform. 39:8.16.1-8.16.32

How to cite ProHits VM:

Liu G, Zhang J, Choi H, Lambert JP, Srikumar T, Larsen B, Nesvizhskii AI, Raught B, Tyers M, Gingras AC.(2012) Using ProHits to Store, Annotate, and Analyze Affinity Purification-Mass Spectrometry (AP-MS) Data. Curr. Protoc. Bioinform. 39:8.16.1-8.16.32

How to cite SAINT:

Choi, H., Larsen, B., Lin., Z.-Y., Breitkreutz, A., Mellacheruvu, D., Fermin, D., Qin, Z.S., Tyers, M., Gingras, A.-C.** and Nesvizhskii, A.I.** (2011) SAINT: probabilistic scoring of affinity purification - mass spectrometry data. Nature Methods, 8:70-3. (** co-corresponding authors). * A manuscript detailing the SAINT options has also been submitted and the reference will be updated shortly.

OR

Choi H, Liu G, Mellacheruvu D, Tyers M, Gingras AC, Nesvizhskii AI.(2012) Analyzing Protein-Protein Interactions from Affinity Purification-Mass Spectrometry Data with SAINT. Curr. Protoc. Bioinform. 39:8.15.1-8.15.23